PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003442-PA
Common NameOsI_01761
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 143aa    MW: 15523.8 Da    PI: 6.1188
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003442-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.87.8e-104271639
                      HHHHHHHHHHHHHHHHT-EEEEEE CS
            SRF-TF 16 RrngilKKAeELSvLCdaevavii 39
                      R+++++K A+ELSvLCd+ va++ 
  BGIOSGA003442-PA  4 RKETVIKMAKELSVLCDVPVALVC 27
                      *********************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.321126IPR002100Transcription factor, MADS-box
PfamPF003191.3E-6427IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-9466IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAGRKETVIK MAKELSVLCD VPVALVCAVG GAVEVWESEE GVLDRYRALP PEVRATRAHT  60
HRGYLERELR ARRAKLAKVR EEGAFKSWGR DALSGIITAE EAPALLESID AAIAAATARQ  120
EALALLDGGG LHLQHEVFCD FFG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565738.15e-26PREDICTED: uncharacterized protein LOC100843549
TrEMBLB8A7H31e-98B8A7H3_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA003442-PA4e-98(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150691120